Publications

An Asymmetrically Balanced Organization of Kinases versus Phosphatases across Eukaryotes Determines Their Distinct Impacts
Ilan Smoly, Netta Shemesh, Michal Ziv-Ukelson, Anat Ben-Zvi and Esti Yeger-Lotem
PLoS Comp. Biol.
The TissueNet v.2 database: A quantitative view of proteins and their interactions across human tissues
Basha O, Barshir R, Sharon M, Lerman E, Kirson B, Hekselman I and Yeger-Lotem E
Nucleic Acids Research, (2017) 45 (D1), pp. D427-D431
Algorithms for Regular Tree Grammar Network Search and Their Application to Mining Human-Viral Infection Patterns
Ilan Smoly, Amir Carmel, Yonat Shemer-Avni, Esti Yeger-Lotem and Michal Ziv-Ukelson
J Comput Biol. 2016 Mar;23(3):165-79. doi: 10.1089/cmb.2015.0168.
Human protein interaction networks across tissues and diseases
Esti Yeger-Lotem and Roded Sharan
Front. Genet. 6:257. doi: 10.3389/fgene.2015.00257
MyProteinNet: Build up-to-date protein interaction networks for organisms, tissues and user-defined contexts
Omer Basha, Dvir Flom, Ruth Barshir, Ilan Smoly, Shoval Tirman & Esti Yeger-Lotem
Nucleic Acids Res. 2015 Jul 1;43(W1):W258-63. doi: 10.1093/nar/gkv515
A combination of gene expression ranking and co-expression network analysis increases discovery rate in large-scale mutant screens for novel Arabidopsis thaliana abiotic stress genes.
Vanessa Ransbotyn, Esti Yeger-Lotem, Omer Basha, Tania Acuna, Christoph Verduyn, Michal Gordon, Vered Chalifa-Caspi, Matthew A. Hannah and Simon Barak
Plant Biotechnol J. 2015 May;13(4):501-13. doi: 10.1111/pbi.12274. Epub 2014 Nov 5.
Comparative Analysis of Human Tissue Interactomes Reveals Factors Leading to Tissue-Specific Manifestation of Hereditary Diseases.
Barshir R, Shwartz O, Smoly IY & Yeger-Lotem E.
PLoS Comput Biol 10(6): e1003632. doi: 10.1371/journal.pcbi.1003632
Cancer evolution is associated with pervasive positive selection on globally expressed genes.
Ostrow SL, Barshir R, DeGregori J, Yeger-Lotem E & Hershberg R.
PLoS Genet. 2014 Mar 6;10(3):e1004239. doi: 10.1371/journal.pgen.1004239. eCollection 2014.
ResponseNet2.0: revealing signaling and regulatory pathways connecting your proteins and genes--now with human data.
Basha O, Tirman S, Eluk A, Yeger-Lotem E.
Nucleic Acids Res. 2013 Jul 1;41(Web Server issue):W198-203.
A context-sensitive framework for the analysis of human signalling pathways in molecular interaction networks
Lan A, Ziv-Ukelson M, Yeger-Lotem E
Bioinformatics. 2013 Jul 1;29(13):i210-i216

Pages