Publications

The TissueNet database of human tissue protein-protein interactions
Barshir R, Basha O, Eluk A, Smoly IY, Lan A, Yeger-Lotem E.
Nucleic Acids Res. 2013 Jan;41(Database issue):D841-4.
ResponseNet: revealing signaling and regulatory networks linking genetic and transcriptomic screening data
Lan A, Smoly IY, Rapaport G, Lindquist S, Fraenkel E, Yeger-Lotem E.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W424-9. Epub 2011 May 16.
Compounds from an unbiased chemical screen reverse both ER-to-Golgi trafficking defects and mitochondrial dysfunction in Parkinson's disease models.
Su LJ, Auluck PK, Outeiro TF, Yeger-Lotem E, Kritzer JA, Tardiff DF, Strathearn KE, Liu F, Cao S, Hamamichi S, Hill KJ, Caldwell KA, Bell GW, Fraenkel E, Cooper AA, Caldwell GA, McCaffery JM, Rochet JC, Lindquist S.
Dis Model Mech. 2010 Mar-Apr;3(3-4):194-208. Epub 2009 Dec 28.
Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity.
Yeger-Lotem E, Riva L, Su LJ, Gitler AD, Cashikar AG, King OD, Auluck PK, Geddie ML, Valastyan JS, Karger DR, Lindquist S, Fraenkel E.
Nat Genet. 2009 Mar;41(3):316-23. Epub 2009 Feb 22.
Alignment of metabolic pathways
Pinter RY, Rokhlenko O, Yeger-Lotem E, Ziv-Ukelson M.
Bioinformatics. 2005 Aug 15;21(16):3401-8. Epub 2005 Jun 28.
Chromosomal organization is shaped by the transcription regulatory network
Hershberg R, Yeger-Lotem E, Margalit H.
Trends Genet. 2005 Mar;21(3):138-42.
Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction
Yeger-Lotem E, Sattath S, Kashtan N, Itzkovitz S, Milo R, Pinter RY, Alon U, Margalit H
Proc Natl Acad Sci U S A. 2004 April 20; 101(16): 5934–5939.
Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation
Yeger-Lotem E, Margalit H.
Nucleic Acids Res. 2003 Oct 15;31(20):6053-61.

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